{"id":2364,"date":"2019-02-01T06:27:29","date_gmt":"2019-02-01T06:27:29","guid":{"rendered":"http:\/\/www.gyanvihar.org\/journals\/?p=2364"},"modified":"2019-06-12T04:55:18","modified_gmt":"2019-06-12T04:55:18","slug":"total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family","status":"publish","type":"post","link":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/","title":{"rendered":"TOTAL PROTEIN EXTRACTION FOR PROTEOMIC STUDY IN MEMBERS OF POACEAE FAMILY"},"content":{"rendered":"<h2><strong>pp. 30-37<\/strong><\/h2>\n<h2 style=\"text-align: center\"><span style=\"font-size: 12pt\">Ajit Kumar Swami <sup>a<\/sup>, Manas Mathur <sup>b<\/sup>,\u00a0 Manoj Kumar Shekhwal <sup>a<\/sup>, \u00a0Risabh Ronin Shrivastava <sup>b<\/sup> , Digvijay Chauhan Rajaram<sup> b <\/sup>\u00a0and Renu Sarin<sup> c<\/sup><\/span><\/h2>\n<h2 style=\"text-align: center\"><span style=\"font-size: 12pt\">a. Division of Biosciences, Seminal Applied Sciences Pvt Ltd,Tonk Road, Jaipur-302015,Rajeshthan, India.<\/span><\/h2>\n<h2 style=\"text-align: center\"><span style=\"font-size: 12pt\">b. School of Agriculture, Suresh Gyan Vihar University, Mahal Road, Jagatpura \u00a0(Raj.) India<\/span><\/h2>\n<h2 style=\"text-align: center\"><span style=\"font-size: 12pt\">c. Department of Botany, University of Rajasthan , Jaipur (Rajasthan ), India<\/span><\/h2>\n<h2><span style=\"font-size: 12pt\">\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0*Corresponding Author Email-manasm407@gmail.com<\/span><span style=\"font-size: 12pt\">\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0<\/span><\/h2>\n<h2><span style=\"font-size: 12pt\">ABSTRACT<\/span><\/h2>\n<h2 style=\"text-align: justify\"><span style=\"font-size: 12pt\">The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass <em>(Elocharis acicularis) and <\/em>Jowar<em> (Sorghum bicolor)<\/em>. The total proteins were analysed by 2-Dimension gel electrophoresis (2-DE). Three methods of sample preparation a) Phenol\/Acetone, b) TCA\/Acetone, without Sonication and c) TCA\/Acetone with Sonication were compared based on Proteome maps of different protein preparations for 2DE, it was found that the number of protein spots were significantly reproducible when proteins were extracted by TCA\/Acetone precipitation method with four cycle of Sonication in Urea and CHAPS buffer. The spot resolution and numbers were consistently better when protein were extracted in precipitation solution with Urea and CHAPS. The images were compared by using master 2-DE Bio-Rad software.<\/span><\/h2>\n<p><span style=\"font-size: 12pt\"><strong>KEYWORDS<\/strong><\/span><\/p>\n<p><span style=\"font-size: 12pt\">2-dimensional gel electrophoresis (2-DE), Phenol\/Acetone, TCA\/Acetone and Sonication<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>\u00a0<\/strong><\/span><span style=\"font-size: 12pt\"><strong>INTRODUCTION<\/strong><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">Protein extraction of plant samples by 2-dimensional gel electrophoresis (2-DE) is quite challenging due to the high level of contamination. <sup>[1]<\/sup> \u00a0Proteomics has been defined as the systematic analysis of the protein population in a tissue, cell or sub cellular compartment. Proteomics are always associated with two-dimensional electrophoresis because two-dimensional gel is more informative as compared to SDS-PAGE that may be evident from this presentation. The study of plant proteomics is still in its infancy, but is likely to become an active field due to its large impact on plant biology <sup>[2]<\/sup>.<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">In the present investigation of three protein extraction methods (a. Phenol\/Acetone, b. TCA\/Acetone without sonication, c. TCA\/Acetone with Sonication.) were evaluated for the study of proteomics in creeping dwarf hair garden grass( <em>Elocharis acicularis<\/em>.) and Jowar (<em>Sorghum bicolor). S. bicolor<\/em> is of main interest in research all over the world after its acceptance as a model plant. It has been ranked fifth in the world and second in United state as an important crop plant<sup>. <\/sup>\u00a0<sup>[3] <\/sup>A proper protein extraction method is required to explore the depth of proteomic study and to establish an effective protocol for protein extraction suitable for 2-DE analysis of <em>S.bicolor<\/em>. In the present study of Dwarf hair garden grass (<em>E. acicularis)<\/em> was taken because of its easy availability in all seasons. Protein extraction under denaturing conditions for 2-DE was remarkably improved by the combination of chemically and physically modified processes including Urea and CHAPS, dense buffer and sonication steps <sup>[4]<\/sup><\/span><span style=\"font-size: 12pt\"><strong>\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0\u00a0<\/strong><\/span><\/p>\n<p><span style=\"font-size: 12pt\"><strong>MATERIALS AND METHODS<\/strong><\/span><\/p>\n<p><span style=\"font-size: 12pt\"><strong>Extraction of total protein from <em>E. acicularis<\/em> and <em>S. bicolor<\/em><\/strong><\/span><\/p>\n<p><span style=\"font-size: 12pt\">Three methods for the whole protein extraction were evaluated.<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">\u00a0<strong>(A.) Phenol\/Acetone,<\/strong> Extraction of total protein was performed using a two (+1)-step protein extraction method. Briefly, leaf samples collected from grass plants (approximately 1 gram) were placed in liquid nitrogen and ground thoroughly into a fine powder by using a pre-cooled mortar and pestle. This fine powder (approximately 1 gram)\u00a0 was transferred \u00a0to a sterile falcon tube containing EDTA 1mM, 3-[(3-Cholamidopropyl) dimethylammonio]-1-propane sulfonic acid (CHAPS 1%), Ascorbic acid 5mM and protease inhibitor (5 \u00b5l) extraction buffer and vortex the solution for 10 sec. After vortexing, sonication was done (4 cycle, 10 second on and 2minute off) and 1.5 ml aliquot of suspension was made in 2 ml microfuge tube. Centrifuged at 1200g for 20 minute at 4\u00baC. The supernatant was collected and proteins were quantified by using established protocol <sup>[5]<\/sup>. Benzonase and RNAse were added to the supernatant and incubated at 30\u00baC for 30 minute. DTT was added (50 mM final concentration) and vortexed. The protein was precipitated by using Phenol\/Acetone method as \u00a0described <sup>[6]<\/sup><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>(B.) TCA\/Acetone method without Sonication, <\/strong>All steps in method B were same as described in method A, only change being Phenol\/Acetone replaced by TCA\/Acetone for precipitation of proteins <sup>[7]<\/sup><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>(C.) TCA\/Acetone method with Sonication, <\/strong>This is a modified form of total protein extraction method as described <sup>[7]<\/sup><strong>. <\/strong>Extraction of total protein was performed using a two (+1)-step protein extraction protocol. 1 gram of leaf sample was ground to fine powder in liquid nitrogen by using a mortar and pestle (precooled).\u00a0 This fine powder was then transferred to a sterile falcon tube containing Trichloroacetic acid\/Acetone extraction buffer [TCAAEB], acetone containing 10% (w\/v) TCA and 0.07% 2-mercaptoethanol (2-BME)] and vortexed for 10 seconds. Aliquot (1.5 ml.) suspension was made, in a 2 ml of centrifuge tube and then incubated at -20\u00baC for 45 minutes. This suspension was mixed after 5 minutes intervals. The proteins were precipitated, centrifuged at 1200g for 20 min at 4\u00baC. The supernatant was decanted and the pellets were homogenized by washing twice with wash buffer (acetone containing 0.07% 2-BME), and then centrifuged under same conditions mentioned earlier. After washing, the supernatant was discarded and pellets were air dried. <sup>[8]<\/sup><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">The pellet were subsequently solubilized in lysis buffer (LB) [8M Urea, 2% CHAPS (w\/v)] and for 15 minutes vortexed and cooled alternately which was then followed by Sonication (4 cycle, pulses 10 second on and 2 min off).The solution was then centrifuged at 12000 g at 20\u00baC for 20 minute to remove the insoluble material. Supernatant was collected and quantified by using established protocol <sup>[5] <\/sup>\u00a0The quantification establishes that the method C is the best method to study total protein extraction in Poaceae family and hence for <em>S. bicolor<\/em> only the Method C was employed for total protein extraction.<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>\u00a0<\/strong><\/span><span style=\"font-size: 12pt\"><strong>2D ELECTROPHORESIS<\/strong><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">The protein pellet were finally resuspended in sample rehydration buffer (8M urea, 2% w\/v CHAPS, 15 mM DTT and 0.5% v\/v IPG buffer pH 3\u201310). The isoelectric focusing was performed using immobilized pH gradient (IPG) strips (Bio-Rad, USA). IPG strips with a pH range from 3-10 were initially used to determine the distribution of differentially expressed spots. Strips in the pH range of 4-7 were used for all the subsequent experiments. IEF on pre-cast IPG strip gels was carried out. The volume 45 \u03bcl of protein (500\u03bcg) was mixed with 150 \u03bcl rehydration buffer [8M urea,2% CHAPS and 50mM DTT( Dithiothreitol )] followed by pipetting into a 7 cm strip holder tray. IPG strips (pH 3-10; 7 cm) were carefully placed onto the protein samples, overlaid by mineral oil. The IPG strips were placed gel-face down onto the protein samples avoiding air bubbles and were allowed to passively rehydrate themselves with the protein samples overnight.<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">Next day these strips were linked to a four-step active rehydration and focusing protocol (Step 1.Start voltage at 0 V, end voltage 250 V, time 15 minute, ramp rapid and temperature 20\u00baC; Step 2.Start voltage at 250 V, end voltage 4,000 V, time 1 hour, ramp slow and temperature 20\u00baC; Step 3.Start voltage at 4,000 V, end voltage 4,000 VHr, ramp rapid and temperature 20\u00baC). Gel limit should be, limit\/gel (50 \u03bcA ),the volt hours 10 -20,000 VHr .Whole procedure was carried out at 20\u00baC and a total of 10-20,000 VHr ,was used for the 7 cm strip. Following IEF, the IPG strips were removed from the strip holder and immediately used for 2-DE or stored at -20\u00baC. The strip gels were equilibrate in 5 ml equilibration buffer ( 6 M urea, 0.375 M Tris-HCL, PH ,8.8, 20% (v\/v) glycerol, 2% (w\/v) SDS), 2% (w\/v) DTT) for 20 minute with gentle agitation (40 rpm), followed by incubation in (freshly prepared) equilibration buffer(5 ml) supplemented with 2.5% (w\/v) Iodoacetamide for 20 minute at room temperature. The IPG strips were rinsed with cathode running buffer [0.025 M Tris, 0.192 M glycine and 0.2% (w\/v) SDS] and placed onto Polyacrylamide gels (12-14%) and electrophoresed at 30 mA for second dimensional separation . Standard protein markers (5 \u03bcl of prestained 2-DE, Protein Standard; Bio-Rad). 2-DE were repeated thrice to check the reproducibility of the method<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>Protein visualization and image analysis<\/strong><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>\u00a0<\/strong>To visualize the protein spots, the gels were stained with staining solution (Coomassie brilliant Blue). Protein patterns in the gels were recorded as digitalized images using a digital scanner (resolution 300 dpi, grey scale; Cano Scan 8000F, Canon, Tokyo, Japan). The gels were quantitiesed in profile mode as instructed in the operating manual of the Image Master 2-DE Platinum software (GE Healthcare).<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>RESULTS <\/strong><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">The Method A, that is, Phenol\/Acetone resulted in a total of 78 spots resolution of which 6 were unique<strong> (Table and Fig. 1). <\/strong>The Method B, with TCA\/Acetone without Sonication produced 89 spots, among them there were 11 unique spots <strong>(Table and Fig. 2).<\/strong>\u00a0 On the other hand, TCA\/Acetone with Sonication or Method C achieved the best spots resolution as 214 differentially expressed spots were observed; this also showed 63 unique spots<strong> (Table and Fig. 3). <\/strong>The proteins spots reproducibility was clearly induced or increased after the Sonication treatment and this was analyzed by 2-DE software. Some\u00a0 protein spots were overlapped or may be\u00a0 very close to each other that means not efficiently resolved in previous two methods (A and B). This establishes that the Method C is the best procedure for spot resolution or Total Protein extraction. Hence, it was established that Method C or TCA\/Acetone with Sonication is the best Protocol for Total Protein extraction for Proteomic study in members of Poaceae family. Therefore, the TCA\/Acetone with Sonication was the only protocol used for Total Protein extraction in <em>S. bicolor.<\/em> \u00a0\u00a0<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">In <em>S. bicolor,<\/em> the Method C resulted in very high number of differentially expressed spots resolution. The TCA\/Acetone extraction method using 2-DE with Sonication, showed higher protein yields as well as resolution of protein separation for leaves of S<em>. bicolor<\/em> with higher spot intensities, in the lower molecular weight or medium isoelectric point (pI) region, which shows the efficacy of Protocol C. It is now expected that the protocol described here can be used to develop high-level proteomic and biochemical studies and can also be applied to other plant tissues .It was observed through the present study that out of the three protocols, the TCA\/Acetone with Sonication method is the best for studying Proteomics of Poaceae family. \u00a0<\/span><\/p>\n<p><span style=\"font-size: 12pt\"><strong>DISCUSSION<\/strong><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">The protocol is rapid, and compatible with silver staining, it could be used for routine protein extraction from plants other than <em>E.acicularis<\/em> and <em>Sorghum bicolor<\/em> for proteomic analysis. In TCA\/acetone method Sonication step play pivotal role. Using sonication from the present study we observed in our protocol that Sonication is required for optimization of this step. When sonication, apply for short pulses(4 cycle,10 second on and 10 second off with two minute gap), and let the sample were cooled in between sonications, the protein yield increased approximately 5 folds (20\u03bcg\/10\u03bcl to 100\u03bcg\/10\u03bcl). Sonication buffers include Urea, CHAPS and protease inhibitors improve sonication efficiency also <sup>[9]<\/sup>. \u00a0The influence of continuous ultrasonic extraction to the yield of dispersed protein and increase of sonication in the recovery of dispersed protein progressively <sup>[10]<\/sup><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">\u00a0When the sample was sonicated, the polysaccharides were completely solubilized whereas without sonication the polysaccharides still remained in the supernatant hindering the following steps of protein extraction. This difference was also visible that more protein spots were observed in the sonicated sample than in the sample without sonication <sup>[11]<\/sup>.<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">In conclusion, the present result (2-DE profiles) demonstrates the suitability of the TCA\/Acetone extraction buffer with a modified form for improved total protein extraction and solubilization in the <em>E.acicularis<\/em> and <em>S. bicolor<\/em> (leaf). This (method establishment) will provide a new land mark in the study of proteomics for the plants of poaceae family.<\/span><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2365\" src=\"http:\/\/www.gyanvihar.org\/journals\/wp-content\/uploads\/2019\/02\/Figure-1-Manas.jpg\" alt=\"\" width=\"458\" height=\"384\" srcset=\"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas.jpg 942w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas-768x644.jpg 768w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas-624x523.jpg 624w\" sizes=\"auto, (max-width: 458px) 100vw, 458px\" \/><\/p>\n<p><span style=\"font-size: 12pt\"><strong>Fig;1.<\/strong> Phenol \/Acetone (<em>E.acicularis<\/em>)<strong> \u00a0<\/strong><\/span><\/p>\n<p><span style=\"font-size: 12pt\"><strong><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2366\" src=\"http:\/\/www.gyanvihar.org\/journals\/wp-content\/uploads\/2019\/02\/Figure-2-manas.jpg\" alt=\"\" width=\"451\" height=\"390\" srcset=\"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-2-manas.jpg 946w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-2-manas-768x664.jpg 768w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-2-manas-624x540.jpg 624w\" sizes=\"auto, (max-width: 451px) 100vw, 451px\" \/>\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 <\/strong><\/span><\/p>\n<p><span style=\"font-size: 12pt\"><strong>Fig; 2.<\/strong> Tca \/Acetone, Without sonication (<em>E.acicularis<\/em>)<\/span><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2367\" src=\"http:\/\/www.gyanvihar.org\/journals\/wp-content\/uploads\/2019\/02\/Figure-3-Manas.jpg\" alt=\"\" width=\"453\" height=\"403\" srcset=\"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-3-Manas.jpg 933w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-3-Manas-768x683.jpg 768w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-3-Manas-624x555.jpg 624w\" sizes=\"auto, (max-width: 453px) 100vw, 453px\" \/><\/p>\n<p><span style=\"font-size: 12pt\"><strong>Fig; 3.<\/strong> Tca \/Acetone, with sonication (<em>E.acicularis<\/em>)<\/span><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2368\" src=\"http:\/\/www.gyanvihar.org\/journals\/wp-content\/uploads\/2019\/02\/Figure-4-Manas.jpg\" alt=\"\" width=\"463\" height=\"535\" srcset=\"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-4-Manas.jpg 2104w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-4-Manas-768x888.jpg 768w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-4-Manas-886x1024.jpg 886w, https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-4-Manas-624x721.jpg 624w\" sizes=\"auto, (max-width: 463px) 100vw, 463px\" \/><\/p>\n<p><span style=\"font-size: 12pt\"> Fig<strong>; 4.<\/strong>Tca \/Acetone, with sonication (<em>Sorghum bicolor<\/em>)<\/span><\/p>\n<p><span style=\"font-size: 12pt\">Table. 1 Differential number of protein spots among three methods (method A, B and C)\u00a0<\/span><\/p>\n<p>&nbsp;<\/p>\n<table width=\"0\">\n<tbody>\n<tr>\n<td width=\"244\"><span style=\"font-size: 12pt\"><strong>Name of methods<\/strong><\/span><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/td>\n<td width=\"215\"><span style=\"font-size: 12pt\"><strong>No. of total spots<\/strong><\/span><\/td>\n<td width=\"161\"><span style=\"font-size: 12pt\"><strong>No.of unique spots(Showing by blue arrows in Fig)<\/strong><\/span><\/td>\n<\/tr>\n<tr>\n<td width=\"244\"><span style=\"font-size: 12pt\">Method <strong>A.<\/strong> (<em>E.acicularis<\/em>)<\/span><\/td>\n<td width=\"215\"><span style=\"font-size: 12pt\">\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 78<\/span><\/td>\n<td width=\"161\"><span style=\"font-size: 12pt\">\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 6<\/span><\/td>\n<\/tr>\n<tr>\n<td width=\"244\"><span style=\"font-size: 12pt\">Method <strong>B.<\/strong> (<em>E.acicularis<\/em>)<\/span><\/td>\n<td width=\"215\"><span style=\"font-size: 12pt\">\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 89<\/span><\/td>\n<td width=\"161\"><span style=\"font-size: 12pt\">\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 11<\/span><\/td>\n<\/tr>\n<tr>\n<td width=\"244\"><span style=\"font-size: 12pt\">Method <strong>C.<\/strong> (<em>E.acicularis<\/em>)<\/span><\/td>\n<td width=\"215\"><span style=\"font-size: 12pt\">\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 214<\/span><\/td>\n<td width=\"161\"><span style=\"font-size: 12pt\">\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 63<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><span style=\"font-size: 12pt\"><strong>REFERENCES<\/strong><\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\"><strong>\u00a0<\/strong><\/span><span style=\"font-size: 12pt\">[1] Natarajan S, Xu C, Caperna TJ ,\u00a0 Garrett WM. \u00a0Comparison of protein solubilization methods suitable for proteomic analysis of soybean seed proteins<em>. Anal Biochem <\/em>2005; 342 :214- 220.<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">[2] Klaas J, Van W. \u00a0Challenges and Prospects of Plant Proteomics. <em>Plant Physio<\/em>\u00a0 2001; 126: \u00a0501\u2013508.<\/span><\/p>\n<h2 style=\"text-align: justify\"><span style=\"font-size: 12pt\">[3] Dahlberg J A, Bandyopadhyay\u00a0 R, Rooney W L, Odody\u00a0 G N, Madera-Torrese P. Evaluation of sorghum germplasm used in US breeding programmes for sources of sugary disease resistance. <em>Plant Pathol<\/em> 2001; 50: 681-689.<\/span><\/h2>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">[4] Zhao Zhixin,\u00a0Wei Zhang<a href=\"http:\/\/www.plantcell.org\/content\/20\/12\/3210.short#aff-1\">a<\/a>,\u00a0Bruce A. Stanley\u00a0and\u00a0 Sarah M. Assmann.. Functional Proteomics of\u00a0<em>Arabidopsis thaliana<\/em>\u00a0Guard Cells Uncovers New Stomatal Signaling Pathways. <em>The Plant Cell<\/em>\u00a0 2008\u00a0; \u00a012: \u00a03210-3226<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">[5] Bradford, M. M. A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Protein-Dye Binding. <em>Anal Biochem<\/em>\u00a0 1976 ; 72: \u00a0248-254.<\/span><\/p>\n<h1 style=\"text-align: justify\"><span style=\"font-size: 12pt\">[6] Xie,\u00a0Chengjian, \u00a0De\u00a0Wang\u00a0, Xingyong\u00a0Yang\u00a0. Protein Extraction Methods Compatible with Proteomic Analysis for the Cotton Seedling. <em>Crop science<\/em> 2009; \u00a049\u00a0:\u00a0395-402<\/span><\/h1>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">[7] Wang W, Vignani R, Scali M, Cresti M. A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. <em>Electrophoresis<\/em> 2006 ; 27: 2782-2786<\/span><\/p>\n<h2 style=\"text-align: justify\"><span style=\"font-size: 12pt\">[8] Deepak NS, Oksoo H, Cristie W, Hideo S, Hitosh I, Randeep R. Protein extraction\/Solubilization Protocol for Monocot and Dicot Plants Gel- Based Proteomics. \u00a0<em>J Plant Biol<\/em> 2006 ;\u00a0 \u00a049 : 413-420<\/span><\/h2>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">[9] Bruno JM, Konstantinos V, Michael F, Carlos BD. Sample sonication after trichloroacetic acid precipitation increases protein recovery from cultured hippocampal neurons, and improves resolution and reproducibility in two-dimensional gel electrophoresis. <em>Electrophoresis<\/em> 2006 \u00a0; 27 : 1825-1831.<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">[10] Moulton KJ, Wang LC. \u00a0\u00a0\u00a0A Pilot-Plant Study of Continuous Ultrasonic Extraction of Soybean Protein. <em>J Food Sci<\/em> 1982; \u00a0\u00a047 : 1127-1129<\/span><\/p>\n<p style=\"text-align: justify\"><span style=\"font-size: 12pt\">[11] Pirovani \u00a0CP, Carvalho HAS, Machado RCR, Gomes DS, Alvim FC, Pomella AWV, Gramacho KP, Cascardo JCM, Pereira GAG, Micheli F. \u00a0Protein extraction for proteome analysisfrom cacao leaves and meristems, organs infected by <em>Moniliophthora perniciosa<\/em>, the causal agent of the witches\u2019 broom disease. <em>Electrophoresis<\/em> 2008; \u00a029 : 2391-2401<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>pp. 30-37 Ajit Kumar Swami a, Manas Mathur b,\u00a0 Manoj Kumar Shekhwal a, \u00a0Risabh Ronin Shrivastava b , Digvijay Chauhan Rajaram b \u00a0and Renu Sarin c a. Division of Biosciences, Seminal Applied Sciences Pvt Ltd,Tonk Road, Jaipur-302015,Rajeshthan, India. b. School of Agriculture, Suresh Gyan Vihar University, Mahal Road, Jagatpura \u00a0(Raj.) India c. Department of Botany, [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[18],"tags":[],"class_list":["post-2364","post","type-post","status-publish","format-standard","hentry","category-journal-of-environment-science-and-technology"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.7 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>research journal - Research Journal<\/title>\n<meta name=\"description\" content=\"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Total Protein Extraction For Proteomic Study In Poaceae Family\" \/>\n<meta property=\"og:description\" content=\"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/\" \/>\n<meta property=\"og:site_name\" content=\"research journal\" \/>\n<meta property=\"article:published_time\" content=\"2019-02-01T06:27:29+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2019-06-12T04:55:18+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"942\" \/>\n\t<meta property=\"og:image:height\" content=\"790\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"gyanvihar2\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:title\" content=\"Total Protein Extraction For Proteomic Study In Poaceae Family\" \/>\n<meta name=\"twitter:description\" content=\"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"gyanvihar2\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"11 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/\",\"url\":\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/\",\"name\":\"Total Protein Extraction For Proteomic Study In Poaceae Family\",\"isPartOf\":{\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#primaryimage\"},\"image\":{\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#primaryimage\"},\"thumbnailUrl\":\"http:\/\/www.gyanvihar.org\/journals\/wp-content\/uploads\/2019\/02\/Figure-1-Manas.jpg\",\"datePublished\":\"2019-02-01T06:27:29+00:00\",\"dateModified\":\"2019-06-12T04:55:18+00:00\",\"author\":{\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/#\/schema\/person\/14d146521108f7ec79f6ca244a14cc77\"},\"description\":\"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.\",\"breadcrumb\":{\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#primaryimage\",\"url\":\"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas.jpg\",\"contentUrl\":\"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas.jpg\",\"width\":942,\"height\":790},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/www.gyanvihar.org\/journals\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"TOTAL PROTEIN EXTRACTION FOR PROTEOMIC STUDY IN MEMBERS OF POACEAE FAMILY\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/#website\",\"url\":\"https:\/\/www.gyanvihar.org\/journals\/\",\"name\":\"research journal\",\"description\":\"Research Journal\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/www.gyanvihar.org\/journals\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"},{\"@type\":\"Person\",\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/#\/schema\/person\/14d146521108f7ec79f6ca244a14cc77\",\"name\":\"gyanvihar2\",\"image\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/www.gyanvihar.org\/journals\/#\/schema\/person\/image\/\",\"url\":\"https:\/\/secure.gravatar.com\/avatar\/cce47db716b101ef36fc3253de08315e?s=96&d=mm&r=g\",\"contentUrl\":\"https:\/\/secure.gravatar.com\/avatar\/cce47db716b101ef36fc3253de08315e?s=96&d=mm&r=g\",\"caption\":\"gyanvihar2\"},\"url\":\"https:\/\/www.gyanvihar.org\/journals\/author\/gyanvihar2\/\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"research journal - Research Journal","description":"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/","og_locale":"en_US","og_type":"article","og_title":"Total Protein Extraction For Proteomic Study In Poaceae Family","og_description":"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.","og_url":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/","og_site_name":"research journal","article_published_time":"2019-02-01T06:27:29+00:00","article_modified_time":"2019-06-12T04:55:18+00:00","og_image":[{"width":942,"height":790,"url":"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas.jpg","type":"image\/jpeg"}],"author":"gyanvihar2","twitter_card":"summary_large_image","twitter_title":"Total Protein Extraction For Proteomic Study In Poaceae Family","twitter_description":"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.","twitter_misc":{"Written by":"gyanvihar2","Est. reading time":"11 minutes"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/","url":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/","name":"Total Protein Extraction For Proteomic Study In Poaceae Family","isPartOf":{"@id":"https:\/\/www.gyanvihar.org\/journals\/#website"},"primaryImageOfPage":{"@id":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#primaryimage"},"image":{"@id":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#primaryimage"},"thumbnailUrl":"http:\/\/www.gyanvihar.org\/journals\/wp-content\/uploads\/2019\/02\/Figure-1-Manas.jpg","datePublished":"2019-02-01T06:27:29+00:00","dateModified":"2019-06-12T04:55:18+00:00","author":{"@id":"https:\/\/www.gyanvihar.org\/journals\/#\/schema\/person\/14d146521108f7ec79f6ca244a14cc77"},"description":"The Total Proteins were isolated and purified from leaves of a dwarf hair garden grass (Elocharis acicularis) and Jowar. SGVU Research Journal.","breadcrumb":{"@id":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/"]}]},{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#primaryimage","url":"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas.jpg","contentUrl":"https:\/\/www.gyanvihar.org\/journals\/uploads\/2019\/02\/Figure-1-Manas.jpg","width":942,"height":790},{"@type":"BreadcrumbList","@id":"https:\/\/www.gyanvihar.org\/journals\/total-protein-extraction-for-proteomic-study-in-members-of-poaceae-family\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/www.gyanvihar.org\/journals\/"},{"@type":"ListItem","position":2,"name":"TOTAL PROTEIN EXTRACTION FOR PROTEOMIC STUDY IN MEMBERS OF POACEAE FAMILY"}]},{"@type":"WebSite","@id":"https:\/\/www.gyanvihar.org\/journals\/#website","url":"https:\/\/www.gyanvihar.org\/journals\/","name":"research journal","description":"Research Journal","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/www.gyanvihar.org\/journals\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"},{"@type":"Person","@id":"https:\/\/www.gyanvihar.org\/journals\/#\/schema\/person\/14d146521108f7ec79f6ca244a14cc77","name":"gyanvihar2","image":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/www.gyanvihar.org\/journals\/#\/schema\/person\/image\/","url":"https:\/\/secure.gravatar.com\/avatar\/cce47db716b101ef36fc3253de08315e?s=96&d=mm&r=g","contentUrl":"https:\/\/secure.gravatar.com\/avatar\/cce47db716b101ef36fc3253de08315e?s=96&d=mm&r=g","caption":"gyanvihar2"},"url":"https:\/\/www.gyanvihar.org\/journals\/author\/gyanvihar2\/"}]}},"_links":{"self":[{"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/posts\/2364","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/comments?post=2364"}],"version-history":[{"count":5,"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/posts\/2364\/revisions"}],"predecessor-version":[{"id":2416,"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/posts\/2364\/revisions\/2416"}],"wp:attachment":[{"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/media?parent=2364"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/categories?post=2364"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.gyanvihar.org\/journals\/wp-json\/wp\/v2\/tags?post=2364"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}